Possibility to set TOM type

[daniaodeh]

Hey again, I really like your package :)

I'd prefer to use signed TOM for unsigned network, is it possible to add the option to set Tom type in consensus modules?

reference : https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/TechnicalReports/signedTOM.pdf

Thanks, Dania

[almeidasilvaf]

Hi, @daniaodeh

That's a great suggestion! Currently, TOM types are selected based on the network type users choose, but one might indeed want to use signed TOM for unsigned networks.

I will add a parameter where users can specify the TOM type. I'll keep you posted.

Best, Fabricio

[daniaodeh]

Great, thanks!

[almeidasilvaf]

Hi, @daniaodeh

As requested, I included support for user-defined TOM type in the latest version of BioNERO (parameter TOM_type of consensus_modules()).

Best, Fabricio