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almiheenko / AGB

Interactive visualization of assembly graphs
https://almiheenko.github.io/AGB/
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No error but empty result #12

Open zmz1988 opened 3 years ago

zmz1988 commented 3 years ago

Hi! I installed AGB via conda, and then ran my code as followed:

agb.py -i /barcode01/flye/ --assembler=Flye -r reference.fasta

and I got these 

Running QUAST...
No information about contig mappings to the reference genome
Aligning graph edges to the reference...
Building JSON files...
Assembly graph viewer is saved to agb_output/viewer.html

But the viewer.html file is empty! I don't know why. I tried to run QUAST alone, and QUAST works fine. When I installed AGB, I got no error message neither. Could you please help?

Thanks!

BBBlanca commented 1 year ago

Hi zmz,

I am also having the same weird empty result. Did you manage to figure out what went wrong?

Thanks!

Yue

melparker101 commented 11 months ago

Hello all,

I am also producing an empty HTML file. Has anyone found a solution?

Thanks Melody