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althonos / pronto

A Python frontend to (Open Biomedical) Ontologies.
https://pronto.readthedocs.io
MIT License
229 stars 48 forks source link

Add an obojson parser/transform #18

Closed cmungall closed 5 years ago

cmungall commented 6 years ago

Hi there, pronto looks great!

Looking for feedback on a json format for bio-ontologies; it's intended to make it such that you don't have to write Yet Another obo parser, or complex OWL transform

Some background:

https://douroucouli.wordpress.com/2016/10/04/a-developer-friendly-json-exchange-format-for-ontologies/

Project:

https://github.com/geneontology/obographs/

althonos commented 6 years ago

Hi @cmungall,

yes this looks like a nice idea ! Considering the way I built the program, it should be possible to add support quite easily I think. I don't know when I'll be able to work on that feature though !

althonos commented 5 years ago

@cmungall : finally! After a year and a half, ontologies can be parsed and serialized from OBO JSON!

cmungall commented 5 years ago

Nice!

On Fri, Oct 11, 2019 at 2:58 PM Martin Larralde notifications@github.com wrote:

@cmungall https://github.com/cmungall : finally! After a year and a half, ontologies can be parsed and serialized from OBO JSON!

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