althonos / pronto

A Python frontend to (Open Biomedical) Ontologies.
https://pronto.readthedocs.io
MIT License
229 stars 48 forks source link

Update fastobo requirement from ~=0.11.1 to ~=0.12.1 #181

Closed dependabot[bot] closed 2 years ago

dependabot[bot] commented 2 years ago

Updates the requirements on fastobo to permit the latest version.

Release notes

Sourced from fastobo's releases.

v0.12.1

Changed

  • Stop releasing the GIL when loading an ontology from a file to fix Windows compilation.
Changelog

Sourced from fastobo's changelog.

v0.12.1 - 2022-07-08

Changed

  • Stop releasing the GIL when loading an ontology from a file to fix Windows compilation.

v0.12.0 - 2022-07-08

Changed

  • Improve handling of exceptions in Rust code.
  • Bump pyo3 dependency to v0.16.
  • Intern constant strings returned by raw_tag methods of clause objects.

Fixed

  • Compilation of fastobo extension with newer setuptools-rust versions (#300).

Removed

  • Support for Python 3.6.

v0.11.1 - 2022-01-23

Fixed

  • Extraction of date argument when creating a CreationDateClause.
  • Skip displaying empty xrefs in fastobo.typedef.DefClause.__repr__.

v0.11.0 - 2022-01-23

Added

  • fastobo.exceptions module with dedicated exception types to report specific errors.
  • fastobo.dump_owl to convert and write an OBO document to an OWL ontology (using fastobo-owl and horned-owl) in Functional-style syntax (using horned-functional).

Changed

  • Bumped fastobo to v0.14.0.
  • Bumped fastobo-graphs to v0.4.4.
  • DateClause may now store a datetime.date instead of a datetime.datetime if the source document contains a date without time specifier.
  • PyPI source distribution now contains vendored Rust sources, allowing compilation without network access.

Fixed

  • setup.py script not auto-installing the Rust compiler in latest setuptools_rust versions.

v0.10.2-post1 - 2021-09-19

Added

  • Aarch64 wheels built from GitHub Actions and deployed to PyPI (#245).

v0.10.2 - 2021-08-02

Changed

  • Bumped pyo3 dependency to v0.14.1.

Fixed

  • fastobo.iter erroneously wrapping SyntaxError raised in the header into a TypeError.

v0.10.1 - 2021-03-30

Changed

... (truncated)

Commits
  • 6bd48af Release v0.12.1
  • dd8e5ee Add @​pkalita-lbl to the README.md [ci skip]
  • ce7bbd2 Drop Python 3.6 and add Python 3.10 environment in AppVeyor
  • aa502e4 Remove code for releasing Python threads to fix Windows compilation
  • c893123 Release v0.12.0
  • 76174ba Revert back DisconnectedChannelError to inherit from ChildProcessError
  • 1419845 Update pyo3 dependency to v0.16
  • 02c0630 Fix compilation of unittest loader for coverage measurements
  • 26a09d5 Drop support for Python 3.6 due to PyO3 dropping support
  • 6b30016 Intern constant strings returned by raw_tag methods of clause objects
  • Additional commits viewable in compare view


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althonos commented 2 years ago

@dependabot ignore this minor version

dependabot[bot] commented 2 years ago

OK, I won't notify you about version 0.12.x again, unless you re-open this PR or update to a 0.12.x release yourself.