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althonos / pronto

A Python frontend to (Open Biomedical) Ontologies.
https://pronto.readthedocs.io
MIT License
226 stars 47 forks source link

cell ontology cl.obo error #201

Closed noamiz5060 closed 1 year ago

noamiz5060 commented 1 year ago

Hello hello I'm using the package mostly for finding ancestors and descendants I've tried to load the cl-obo file but every time I try to use it, it returns errors to me (for example image

The error I get here is 'NCBITaxon:9606' I also get other errors with other functions, like curie I've tried different ways the upload the obo file, thinking that's the problem. (slug='cl-basic.obo', local=True) (slug='cl-basic.obo', local=False) (slug='http://purl.obolibrary.org/obo/cl/cl-basic.obo', local=False)

I'd love any type of help

p.s Another important question. Is it possible to get a cell descendants WITHOUT develop_from relationship? The reason I'm using this package is because in others, they treat develop_from as 'is_a' or 'subclass_of' and it ruins what I try to build. I'd love to hear how to do it

an example, Bm3 delta doesn't have any descendants, but Bm3 has a develop_from connection with it. image

althonos commented 1 year ago

Hi, it doesn't seem like you're using pronto in the examples you're sharing!