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althonos
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pyhmmer
Cython bindings and Python interface to HMMER3.
https://pyhmmer.readthedocs.io
MIT License
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Pass query name to translated sequences
#30
valentynbez
closed
1 year ago
0
Bioconda update to v0.7.0 is blocked
#29
jhahnfeld
closed
1 year ago
3
Suggestion: Add esl-reformat as method to convert MSA to stockholm format
#28
jpjarnoux
closed
1 year ago
4
Possibility to filter alignment results on coverage between HMM and target
#27
jpjarnoux
opened
1 year ago
6
hmmsearch gathering/trusted/noise cutoffs doesn't apply to single domains (i.e., --domT)
#26
satriaphd
closed
1 year ago
4
search_hmm results in segmentation fault
#25
snerligit
closed
2 years ago
2
Multiple HMMFiles
#24
zdk123
closed
1 year ago
2
how to search HMM file with multiple profiles, ie Pfam?
#23
nextgenusfs
closed
2 years ago
2
[QUESTION] How to run hmmsearch and save results using pyhmmer ?
#22
alienzj
closed
2 years ago
3
Work with multiprocessing
#21
jpjarnoux
closed
2 years ago
6
bytes type needed for name in TextSequence example
#20
tmsincomb
closed
2 years ago
1
ValueError: Could not build HMM: Unable to name the HMM.
#19
eloyvallinaes
closed
2 years ago
5
pip install pyhmmer fail for M1
#18
tmsincomb
closed
1 year ago
11
zip argument #1 must support iteration error + other question
#17
willhuynh11
opened
2 years ago
1
Recommended settings for searching a small number of profiles against a large database
#16
seanrjohnson
closed
1 year ago
15
ImportError: Cannot install pyhmmer in ubuntu
#15
yongjuntan
closed
2 years ago
3
Fix transition probabilities produced by `Builder.build_msa`
#14
althonos
closed
2 years ago
0
Implement long targets pipeline for consistent `nhmmer` results
#13
althonos
closed
3 years ago
1
nhmmer reports Alphabet mismatch
#12
fbosnic
closed
3 years ago
3
Bioconda Install Error: Unsatisfiable Error
#11
CCranney
closed
2 years ago
4
ValueError: Could not determine format of file: '/dbfs/mnt/LuxC.sto'
#10
lzhangUT
opened
3 years ago
3
Is it possible to get/apply cutoffs?
#9
zdk123
closed
3 years ago
3
Use hpc_hmmsearch
#8
apcamargo
opened
3 years ago
6
Could not parse file: Line 20: illegal character -
#7
JediKnightChan
closed
3 years ago
2
[ImgBot] Optimize images
#6
imgbot[bot]
closed
2 years ago
1
new empty HMM segfaults when saved to file
#5
RuneBlaze
closed
1 year ago
3
search_hmm finds 0 hits
#4
GiancarloCroce
closed
3 years ago
5
build hmm from multiple sequence alignment
#3
tijeco
closed
3 years ago
7
Add code to allow `phmmer` search pipelines
#2
althonos
closed
3 years ago
0
Rewrite `setup.py` to allow compiling C libraries without `autotools`
#1
althonos
closed
4 years ago
1
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