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althonos / pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
https://pyrodigal.readthedocs.org
GNU General Public License v3.0
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tests failing in archlinux #33

Closed kbipinkumar closed 1 year ago

kbipinkumar commented 1 year ago

i am attemping build archlinux package using PKGBUILD from aur. the process errors out at the check() stage with following output

==> Starting check()...
/home/xxx/PKGBUILDS/python-pyrodigal/PKGBUILD: line 28: cd: /home/xxx/PKGBUILDS/python-pyrodigal/src/pyrodigal-2.1.0/build/lib.linux-x86_64-cpython-3.10: No such file or directory
==> ERROR: A failure occurred in check()

i have not modified PKGBUILD in any way.

EDIT: from perusing the source directory there is no lib.linux-x86_64-cpython-3.10 folder but a folder named lib.linux-x86_64-cpython-310 does exist. so it looks like exported pyver variables needs modifications as below

local pyver=$(python -c 'import sys; print("{}{}".format(*sys.version_info[:2]))')
althonos commented 1 year ago

Hi @kbipinkumar, thanks for the bug report, this should be fixed now.