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althonos / scoring-matrices

Dependency free, Cython-compatible scoring matrices to use with biological sequences.
MIT License
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[FEATURE] PFASUM matrices #3

Open valentynbez opened 1 month ago

valentynbez commented 1 month ago

PFASUM are matrices built from Pfam structural alignments (reference). The main website is down, but I found their implementation on GH: https://github.com/Wang-lab-UCSD/benchmarking_xGPR/tree/6ec251a65da302e13c221d12bb1fbb9058358f05/data_preprocessing_scripts/protein_tools/pssm_encoder/pfasum_matrices.

althonos commented 1 month ago

A PR is welcome if you wanna make one (maybe not with all the matrices, but a selection of them like BLOSUM and PAM) :+1: