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alyosama / virnet

VirNet: A deep attention model for viral reads identification
Apache License 2.0
30 stars 4 forks source link

Requirements.txt Problems #9

Closed schackartk closed 2 years ago

schackartk commented 3 years ago

The file requirments.txt is a misspelling of "requirements.txt" (the first "e" is missing in the file name.)

Also, pip3 doesn't seem to recognize pickle. The following occurs:

$ pip3 install pickle
> ERROR: Could not find a version that satisfies the requirement pickle
> ERROR: No matching distribution found for pickle

I have found pickle5 and pickle-mixin on PyPi. Which pickle should be installed for compatibility to this tool?

schackartk commented 2 years ago

On a related note, your README instructions for installing dependencies is incorrect. The -r flag must be included:

pip3 install -r requirments.txt

And once the file name has been fixed, it will be 

pip3 install -r requirements.txt
alyosama commented 2 years ago

Thank you @schackartk. I have added -r flag in the documentation Actually, I am not maintaining the package anymore as I am working on other projects. Feel free to add a pull request of any changes and I will approve it.

schackartk commented 2 years ago

Thanks for updating the documentation, but the original issue still stands. I am not sure what version of pickle the tool uses. I also have some issues due to ambiguity in the version number of the other requirements.