alyssafrazee
commented
10 years ago Thanks for the note. The "release" (Bioconductor) installation isn't available yet, because the package is still under review, so I've removed those instructions from the README for now.
As for the "development" version, you'll need to use the "devel" version of Bioconductor. See http://www.bioconductor.org/developers/how-to/useDevel/. After you've switched to devel, you'll be able to get the necessary versions of GenomicRanges and other dependencies with biocLite. I've also clarified this in the README.
Please comment again if there are still problems after switching to devel.
Hi,
I have tried to install the devel as well as the release version and failed on both counts.
I have installed al the required dependencies and updated all other tools but it seems to require a newr version of GenomicRanges that is not available in Bioconductor.
"GenomicRanges' 1.16.3 is being loaded, but >= 1.17.25"
My R sessionInfo()
locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages: [1] parallel stats graphics grDevices utils datasets methods base
other attached packages: [1] Biobase_2.24.0 rtracklayer_1.24.2 GenomicRanges_1.16.3 GenomeInfoDb_1.0.2 IRanges_1.22.9 BiocGenerics_0.10.0 [7] BiocInstaller_1.14.2
loaded via a namespace (and not attached): Error in x[["Version"]] : subscript out of bounds In addition: Warning message: In FUN(c("BatchJobs", "BBmisc", "BiocParallel", "Biostrings", "bitops", : DESCRIPTION file of package 'devtools' is missing or broken