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alyssafrazee / polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.
http://biorxiv.org/content/early/2014/12/12/006015
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compressed files #16

Closed shrukane closed 9 years ago

shrukane commented 9 years ago

Hi, can the tool take compressed files as input for simulation ?

alyssafrazee commented 9 years ago

Yes, all the data read-in functions used in the package (readDNAStringSet from Biostrings and read.table) accept compressed files as input. (They should be fasta or gtf format when uncompressed).