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alyssafrazee / polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.
http://biorxiv.org/content/early/2014/12/12/006015
89 stars 51 forks source link

fixed bug wrt strand specific simulation #34

Closed mikelove closed 8 years ago

alyssafrazee commented 8 years ago

Thanks for doing this!

alyssafrazee commented 8 years ago

@JMF47 can you get this into Bioc?

mikelove commented 8 years ago

Thank you @alyssafrazee and @JMF47 !

mikelove commented 8 years ago

hi @JMF47 & @jtleek

Use of the stranded option in the Bioc devel branch is of interest in the research community:

https://twitter.com/BenLangmead/status/765610911008567296

However, the Bioc devel branch still contains the bug which was fixed in this commit. Let me know if I can help at all.

JMF47 commented 8 years ago

Hey Mike, thanks for the heads up. I thought I had pushed it all the way to bioC but it might have stalled at some point. Let me do it when I get home today

On Aug 17, 2016, at 9:19 AM, Mike Love notifications@github.com<mailto:notifications@github.com> wrote:

hi @JMF47https://github.com/JMF47 & @jtleekhttps://github.com/jtleek

Use of the stranded option in the Bioc devel branch is of interest in the research community:

https://twitter.com/BenLangmead/status/765610911008567296

However, the Bioc devel branch still contains the bug which was fixed in this commit. Let me know if I can help at all.

You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/alyssafrazee/polyester/pull/34#issuecomment-240407396, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AFIAA1ntzzVXuBDJp7BUTbGcppEqUtPBks5qgwnGgaJpZM4I9SNO.

jtleek commented 8 years ago

Hi everyone

I've been meaning to get all the new "bridges" set up for all leekgroup packages. But it is a bit of a pain so I keep pushing it off. I'll try to prioritize as well

Jeff

On Wed, Aug 17, 2016 at 9:20 AM Jack Fu notifications@github.com wrote:

Hey Mike, thanks for the heads up. I thought I had pushed it all the way to bioC but it might have stalled at some point. Let me do it when I get home today

On Aug 17, 2016, at 9:19 AM, Mike Love <notifications@github.com<mailto: notifications@github.com>> wrote:

hi @JMF47https://github.com/JMF47 & @jtleekhttps://github.com/jtleek

Use of the stranded option in the Bioc devel branch is of interest in the research community:

https://twitter.com/BenLangmead/status/765610911008567296

However, the Bioc devel branch still contains the bug which was fixed in this commit. Let me know if I can help at all.

You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub< https://github.com/alyssafrazee/polyester/pull/34#issuecomment-240407396>, or mute the thread< https://github.com/notifications/unsubscribe-auth/AFIAA1ntzzVXuBDJp7BUTbGcppEqUtPBks5qgwnGgaJpZM4I9SNO

.

— You are receiving this because you were mentioned.

Reply to this email directly, view it on GitHub https://github.com/alyssafrazee/polyester/pull/34#issuecomment-240408267, or mute the thread https://github.com/notifications/unsubscribe-auth/ABf7WsVtHcpaOPp-X2OgKyYqrqxMq6h9ks5qgwqLgaJpZM4I9SNO .