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alyssafrazee / polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.
http://biorxiv.org/content/early/2014/12/12/006015
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Time and memore requirements #36

Open mw55309 opened 8 years ago

mw55309 commented 8 years ago

Hi

I've been trying to simulate an average of ~5000 reads from ~10000 transcripts.

I set this running at 4pm last night, and it's still running now with only an empty output directory to show for it. Running on 2 cores with 8Gb of RAM.

Any idea if this is normal?

Cheers Mick

mw55309 commented 8 years ago

OK, it looks like this was because I set reportcoverage=TRUE.

Removing the parameter gives me some data after only a few minutes

JMF47 commented 8 years ago

Hey Mick I will look into the reportcoverage run times

aarzalluz commented 7 years ago

Hi,

I've been having similar memory and time issues running a simulation with reportcoverage = TRUE. Has this been resolved yet?

Ángeles