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alyssafrazee / polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.
http://biorxiv.org/content/early/2014/12/12/006015
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Problems with matrix while running the simulate experiment #43

Closed alessandraalves closed 7 years ago

alessandraalves commented 8 years ago

Hello. I am having this problem, and I need desperately to fix it When I try to run the simulate experiment and when num_reps has length 2, and fold_changes is a matrix of dimensions: #transcripts x 2 this is what appears to me every single time

basemeans[,2] = fold_changes * basemeans[,1]

I was wondering if you could help me on this one. I already saw another person wrote something similar, however when I went to the link where I believe there was my solution the link was out.

JMF47 commented 8 years ago

What version are you on? Try updating to the latest version first

On Oct 27, 2016, at 12:07 AM, alessandraalves notifications@github.com<mailto:notifications@github.com> wrote:

Hello. I am having this problem, and I need desperately to fix it When I try to run the simulate experiment and when num_reps has length 2, and fold_changes is a matrix of dimensions: #transcripts x 2 this is what appears to me every single time

basemeans[,2] = fold_changes * basemeans[,1]

I was wondering if you could help me on this one. I already saw another person wrote something similar, however when I went to the link where I believe there was my solution the link was out.

You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/alyssafrazee/polyester/issues/43, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AFIAAwJC5XFqZrSQoq8klJ8vH9l4MY5lks5q4CNWgaJpZM4Kh7Hm.

alyssafrazee commented 7 years ago

Is this still a problem on the latest version? If not, please let us know here and I can try to debug over the holiday break.

alessandraalves commented 7 years ago

Hi. I have not had the time to try it again because I am currently working on something else. I will be doing another test this weekend and by next Monday I will let you know, ok?

2016-12-12 22:21 GMT-03:00 Alyssa Frazee notifications@github.com:

Is this still a problem on the latest issue? If not, please let us know here and I can try to debug over the holiday break.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/alyssafrazee/polyester/issues/43#issuecomment-266606981, or mute the thread https://github.com/notifications/unsubscribe-auth/AGzaaMi52xd5Yx1VGm6ONfhdtbkkykJvks5rHfMegaJpZM4Kh7Hm .

-- Att,

Alessandra Alves

alyssafrazee commented 7 years ago

Closing since I believe we fixed this in the last version bump, but feel free to reopen if there are still issues on the latest version!