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alyssafrazee / polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.
http://biorxiv.org/content/early/2014/12/12/006015
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error in function simulate_experiment_countmat #71

Open mhjiang97 opened 4 years ago

mhjiang97 commented 4 years ago

what I did:

simulate_experiment_countmat(fasta = "~/doc/reference/fa/gencode.v32.transcripts.fa",
                                                      readmat = merges, outdir = "~/tmp/polyester/")

the error:

Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'i' in selecting a method for function 'extractROWS': invalid 'times' argument

does it mean this error happened because of the Fasta file is too big? I tried a subset of the whole Fasta file with a corresponding readmat and the simulate function ran well. thank you very much!