No, I only use bundled wire on the lowest level all vertical wires are normal redstone not bundled.
I think that I've found the part of my circuit that is crashing, this is a configuration that I use and it alone crashes when pickblocking and placing it.
https://gist.github.com/12e4670e6ada1967a626576e2ef9a1ef https://gist.github.com/faa239da80bc1906d6f1b6ded7780049 Just using pickblock and placing the result crashes the circuit. A blueprint of that circuit also does not do anything when trying to place it.
SuperCircuitMaker-1.0.4 forge-1.10.2-12.18.2.2125