Incorrect translation of a complex mutation

ambj / MuPeXI

MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.

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Incorrect translation of a complex mutation #22

Open gilhornung opened 5 years ago

gilhornung commented 5 years ago

Hi Anne-Mette,

I have a vcf with a complex mutation (a phasing of two substitutions in close proximity). I noticed that MuPeXI translates the wrong sequence from this mutation. For example, I see a peptide MQLMPFGSQL, but the sequence should actually be MQLMPFGSLL.

I am using MuPeXI 1.2

You can find all the relevant files in: https://owncloud.incpm.weizmann.ac.il/owncloud/index.php/s/V86PPIQyQL2yBHp

All the best,

Gil

ambj commented 5 years ago

Hi Gil Thank you for noticing this bug and giving me all of the necessary files to do the debugging - i will try to look into it as soon as possible but i am a bit swamped at the moment. Best, /AM