amc-heme / SCUBA

Plotting functions for SingleCellExperiment objects
MIT License
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Add guidance on HDF5 compression in vignettes #81

Open wish1832 opened 8 months ago

wish1832 commented 8 months ago

The compression level of SCE and anndata objects can considerably affect performance of SCUBA. A vignette should be created detailing how to change compression and HDF5 "chunk" dimensions, and optimal settings should be recommended.