The slot parameter for anndata objects currently has no effect, and it is only possible to pull feature expression data from the X matrix or obsm matrices.
The equivalent of "slots" in Seurat objects is "layers". The FetchData python script should be modified to pull from layers when slot is defined.
Given that "slot" has been renamed to "layer" in Seurat objects, and that it is already termed "layer" in anndata objects, the slot parameter should be renamed to layer #37.
The
slotparameter for anndata objects currently has no effect, and it is only possible to pull feature expression data from the X matrix or obsm matrices.The equivalent of "slots" in Seurat objects is "layers". The FetchData python script should be modified to pull from layers when
slotis defined.Given that "slot" has been renamed to "layer" in Seurat objects, and that it is already termed "layer" in anndata objects, the
slotparameter should be renamed tolayer#37.