amc-heme / scExploreR

Shiny app for single cell omics data visualization
https://amc-heme.github.io/scExploreR/
MIT License
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Add ADT thresholds chosen upon browser set-up #279

Open wish1832 opened 1 month ago

wish1832 commented 1 month ago

The current ADT thresholding interface does not display thresholds to end users, which impedes reproducible research by introducing undocumented methods.

The thresholds are stored in the config file, and these can be added to the auto-generated object dictionary if present. For extra credit, we can also include ridge plots split by cluster, with a vertical line drawn at each threshold.