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amcphail / hmatrix-gsl-stats

GSL Statistics functions for Haskell hmatrix
BSD 3-Clause "New" or "Revised" License
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Build fail on ghc-7.8.4 #4

Closed jimstutt closed 9 years ago

jimstutt commented 9 years ago

ghc-7.8.4 can't find gsl on Nixos-14.12 x86_64. I have gsl headers and lib installed in /usr/local/include and /usr/local.lib; -extra-include-dirs and --extra-lib-dirs flags are being ignored if I add them. Looking on hydra the builds started failing with ghc-7.8.4 I get the same msg as:

http://hydra.nixos.org/build/18786082/nixlog/1

Checking foreign libraries... FAIL 77 * Sorry, I can't link GSL. 78 * Please make sure that the appropriate -dev packages are installed. 79 * You can also specify the required libraries using 80 * cabal install hmatrix-gsl-stats --configure-option=link:lib1,lib2,lib3,etc. 81building 82Setup: Package hmatrix-gsl-stats-0.2 can't be built on this system. 83builder for ‘/...-haskell-hmatrix-gsl-stats-0.2.drv’ failed with exit code 1pThis Checking foreign libraries... FAIL 77 * Sorry, I can't link GSL. 78 * Please make sure that the appropriate -dev packages are installed. 79 * You can also specify the required libraries using 80 * cabal install hmatrix-gsl-stats --configure-option=link:lib1,lib2,lib3,etc. 81building 82Setup: Package hmatrix-gsl-stats-0.2 can't be built on this system. 83builder for ‘/...-haskell-hmatrix-gsl-stats-0.2.drv’ failed with exit code 1

amcphail commented 9 years ago

Are either of these files on your system in a findable location?

include <gsl/gsl_sf_gamma.h>

include <gsl/gsl_sf_exp.h>

On 28 March 2015 at 21:07, jimstutt notifications@github.com wrote:

ghc-7.8.4 can't find gsl on Nixos-14.12 x86_64. I have gsl headers and lib installed in /usr/local/include and /usr/local.lib; -extra-include-dirs and --extra-lib-dirs flags are being ignored if I add them. Looking on hydra the builds started failing with ghc-7.8.4 I get the same msg as:

http://hydra.nixos.org/build/18786082/nixlog/1

Checking foreign libraries... FAIL 77 * Sorry, I can't link GSL. 78 * Please make sure that the appropriate -dev packages are installed. 79 * You can also specify the required libraries using 80 * cabal install hmatrix-gsl-stats --configure-option=link:lib1,lib2,lib3,etc. 81building 82Setup: Package hmatrix-gsl-stats-0.2 can't be built on this system. 83builder for ‘/...-haskell-hmatrix-gsl-stats-0.2.drv’ failed with exit code 1pThis Checking foreign libraries... FAIL 77 * Sorry, I can't link GSL. 78 * Please make sure that the appropriate -dev packages are installed. 79 * You can also specify the required libraries using 80 * cabal install hmatrix-gsl-stats --configure-option=link:lib1,lib2,lib3,etc. 81building 82Setup: Package hmatrix-gsl-stats-0.2 can't be built on this system. 83builder for ‘/...-haskell-hmatrix-gsl-stats-0.2.drv’ failed with exit code 1

— Reply to this email directly or view it on GitHub https://github.com/amcphail/hmatrix-gsl-stats/issues/4.

amcphail commented 9 years ago

This patch, 820e40d, changes the build method for finding libraries (it doesn't anymore. Just like hmatrix).

jimstutt commented 9 years ago

I pulled you new upload 0.2.1 from git. I have both headers available but with their path as an --extra-include-dirs I have a problem with double.h.

Created temporary directory: /run/user/1000/ghc23348_0 *\ C Compiler: /nix/store/w1lj2s6v2wjmgd44fdi9i1p53qbxrqdc-gcc-wrapper-4.8.3/bin/gcc -fno-stack-protector -DTABLES_NEXT_TO_CODE -O4 -msse2 -Wall -fPIC -O2 -x c lib/Numeric/GSL/statistics-aux.c -o /run/user/1000/ghc23348_0/ghc23348_1.s -Wimplicit -S '-D__GLASGOW_HASKELL__=708' -Idist/build/autogen -Idist/build -I/nix/store/l59kfcm2bsrp4hadhzgr4lmk900hkcma-gsl-1.16/include/gsl -I/nix/store/85ac5rpj9vc9l2w7hgb40wa5h6s5aac1-haskell-vector-ghc7.8.3-0.10.12.1-shared/lib/ghc-7.8.3/vector-0.10.12.1/include -I/nix/store/kckfb0hki6hrr6pkfpdqcmk8bdsnfzb8-haskell-primitive-ghc7.8.3-0.5.4.0-shared/lib/ghc-7.8.3/primitive-0.5.4.0/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/time-1.4.2/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/bytestring-0.10.4.0/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/base-4.7.0.1/include -I/nix/store/z39i96sah6h4s5392riwxbq1yksrchi4-gmp-5.1.3/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/integer-gmp-0.5.1.0/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/include

lib/Numeric/GSL/statistics-aux.c:1:39: fatal error: gsl/gsl_statistics_double.h: No such file or directory

include <gsl/gsl_statistics_double.h>

                                       ^

compilation terminated.

Tnx for the fast response. I don't know whether the etiquette is to reopen when the issue isn't resolved?

jimstutt commented 9 years ago

I invoked it with both gsl-1.16/include and gsl-1.16/include/gsl in the --extras

cabal install --extra-include-dirs=/nix/store/l59kfcm2bsrp4hadhzgr4lmk900hkcma-gsl-1.16/include/:/nix-store/l59kfcm2bsrp4hadhzgr4lmk900hkcma-gsl-1.16/include/gsl --extra-lib-dirs=/nix/store/l59kfcm2bsrp4hadhzgr4lmk900hkcma-gsl-1.16/lib -v3

jimstutt commented 9 years ago

Both gsl/gsl_statistics_double h and /lib/Numeric/gsl/GSL/statistics-aux.c exist in seemingly the correct path.

amcphail commented 9 years ago

Hi,

Thanks for your reply.

If the issue isn't resolved then by all means reopen it.

I'm looking into this some more.

Cheers,

Vivian

On 29 March 2015 at 23:39, jimstutt notifications@github.com wrote:

I pulled you new upload 0.2.1 from git. I have both headers available but with their path as an --extra-include-dirs I have a problem with double.h.

Created temporary directory: /run/user/1000/ghc23348_0 *\ C Compiler: /nix/store/w1lj2s6v2wjmgd44fdi9i1p53qbxrqdc-gcc-wrapper-4.8.3/bin/gcc -fno-stack-protector -DTABLES_NEXT_TO_CODE -O4 -msse2 -Wall -fPIC -O2 -x c lib/Numeric/GSL/statistics-aux.c -o /run/user/1000/ghc23348_0/ghc23348_1.s -Wimplicit -S '-D__GLASGOW_HASKELL__=708' -Idist/build/autogen -Idist/build -I/nix/store/l59kfcm2bsrp4hadhzgr4lmk900hkcma-gsl-1.16/include/gsl -I/nix/store/85ac5rpj9vc9l2w7hgb40wa5h6s5aac1-haskell-vector-ghc7.8.3-0.10.12.1-shared/lib/ghc-7.8.3/vector-0.10.12.1/include -I/nix/store/kckfb0hki6hrr6pkfpdqcmk8bdsnfzb8-haskell-primitive-ghc7.8.3-0.5.4.0-shared/lib/ghc-7.8.3/primitive-0.5.4.0/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/time-1.4.2/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/bytestring-0.10.4.0/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/base-4.7.0.1/include -I/nix/store/z39i96sah6h4s5392riwxbq1yksrchi4-gmp-5.1.3/include -I/nix/store/4yn5j14b3650lsdka1 6x30z1in mbpnyl-ghc-7.8.3/lib/ghc-7.8.3/integer-gmp-0.5.1.0/include -I/nix/store/4yn5j14b3650lsdka16x30z1inmbpnyl-ghc-7.8.3/lib/ghc-7.8.3/include

lib/Numeric/GSL/statistics-aux.c:1:39: fatal error: gsl/gsl_statistics_double.h: No such file or directory

include

^ compilation terminated.

Tnx for the fast response. I don't know whether the etiquette is to reopen when the issue isn't resolved?

— Reply to this email directly or view it on GitHub https://github.com/amcphail/hmatrix-gsl-stats/issues/4#issuecomment-87388550 .

amcphail commented 9 years ago

Hi Jim,

Does hmatrix install successfully on your system?

Vivian

On 30 March 2015 at 00:48, jimstutt notifications@github.com wrote:

Both gsl/gsl_statistics_double h and /lib/Numeric/gsl/GSL/statistics-aux.c exist in seemingly the correct path.

— Reply to this email directly or view it on GitHub https://github.com/amcphail/hmatrix-gsl-stats/issues/4#issuecomment-87401768 .