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amina01 / AcRanker

AcRanker is a machine learning system developed in python that ranks proteins in a proteome as per their Anti-CRISPR tendencies predicted using sequence features.
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Error when using AcRanker: ImportError: cannot import name 'joblib' from 'sklearn.externals'. #6

Open jdcfc opened 1 year ago

jdcfc commented 1 year ago

Hi there,

When I try to use the AcRanker tool through Conda, I receive the following error:

Traceback (most recent call last): File "/home/ubuntu/AcRanker/acranker.py", line 9, in <module> from server2 import * File "/home/ubuntu/AcRanker/server2.py", line 29, in <module> from sklearn.externals import joblib ImportError: cannot import name 'joblib' from 'sklearn.externals' (/opt/miniconda3/envs/AcRanker/lib/python3.11/site-packages/sklearn/externals/__init__.py) (AcRanker) ubuntu@jdtest2:~/AcRanker$ python acranker.py --help Traceback (most recent call last): File "/home/ubuntu/AcRanker/acranker.py", line 9, in <module> from server2 import * File "/home/ubuntu/AcRanker/server2.py", line 29, in <module> from sklearn.externals import joblib ImportError: cannot import name 'joblib' from 'sklearn.externals' (/opt/miniconda3/envs/AcRanker/lib/python3.11/site-packages/sklearn/externals/__init__.py)

I was wondering if anyone has come across this error and if so, how they resolved it?

Thanks in advance!

TahaAhmad4411 commented 3 months ago

Hi, you need to install joblib separately because it is deprecated in newer models of sklearn.externals Worked for me after "!pip install joblib" and then "!import joblib" in colab