Closed QqQss closed 5 years ago
Hey, can you send me the dimensions of all your inputs?
Hey, can you send me the dimensions of all your inputs?
you mean input files?
Yes, test.sc, test.label, test.bulk and test.dim
Yes, test.sc, test.label, test.bulk and test.dim
Ok, I could give you a Rdata file containing all of these. Could you give me your e-mail?
Sure. amfrishberg@gmail.com.
OK, I've sent it to you.
I don't know why but I didn't get it. Make sure you are sending it to the email without the dot in the end of the address.
I used another email and sent it again. How about this time?
Well it seems that some of the iterations return errors since you don't provide enough genes (usually there are 20000+ genes in RNA-seq and scRNA-seq data sets. If you can, it is much better to it with all of the genes. Anyway, I will update the CRAN package to avoid this issue in the future.
OK, I'll try it with all 20000+ genes. The reason why I only used a small set of highly variant genes it that your tutorial 'SCFlu' matrix only contain 1000+ genes...
OK, that works. Thank for your patientce ~
Hi, I test your tutorial data that seem run well. But when I test my data, using this command:
cpm.res = CPM(test.sc, test.label, test.bulk, test.dim)
then I got some errors below:and then I used 'warnings()' command, got these warnings:
I checked all my input data's class, and all of them were same as your tutorial's.
So, why is this so?and how to fix it?