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amkozlov / raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible
GNU Affero General Public License v3.0
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Having trouble again with input data : Error loading MSA: cannot support any format supported by Raxml-NG #111

Closed Niv94 closed 3 years ago

Niv94 commented 3 years ago

Hi,

I am receiving "cannot parse error" for my SNP data although I checked the format and cannot see any visible difference between the one that works fine and the one that doesn't. In fact the no of SNPs I used here are less than the one that worked. I am wondering if someone can help?

Thank you in advance Nivi

amkozlov commented 3 years ago

Hi Nivi,

please try to specify your data type manually, e.g.

--msa-format fasta --log debug

this should give you a more informative error message.

Niv94 commented 3 years ago

Hi,

Thank you so much for reaching out. I am using the GUI version of RaxML and so unable to type those commands manually. Could you please help?

Thanks again Nivi

On Jan 11, 2021, at 3:43 AM, Alexey Kozlov notifications@github.com wrote:

--msa-format fasta --log debug

amkozlov commented 3 years ago

Are you using raxmlGUI wrapper? If so, it does contain raxml-ng binary which you can use with the command line interface.

Please see instructions here:

https://github.com/amkozlov/raxml-ng/wiki/Tutorial#preparing-the-alignment

amkozlov commented 3 years ago

closing due to inactivity, please feel free to reopen if the problem persists