Closed mjgomez12 closed 1 year ago
@mjgomez12 thanks for reporting! could you please post full raxml-ng log file, and if possible, your input files (all-concatenated-only-natural.fa
and modeltest-output.part.aic
)?
If the issue still exists, please reopen.
Hi,
I am trying to use raxml-ng for phylogenetic reconstruction of a set of chloroplasts. When I run it I get the following error:
`[00:00:00] NOTE: Resuming execution from checkpoint (logLH: -327888.58, ML trees: 16, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 3 / 761 / 12128
Starting ML tree search with 20 distinct starting trees
[00:00:00 -327888.581464] SPR radius for FAST iterations: 20 (autodetect) [00:00:00 -327888.581464] SLOW spr round 7 (radius: 15) raxml-ng: /opt/conda/conda-bld/raxml-ng_1569616353378/work/libs/pll-modules/src/optimize/pll_optimize.c:1548: recomp_iterative_multi: Assertion
xguess[p] >= xmin && xguess[p] <= xmax' failed. raxml-ng: /opt/conda/conda-bld/raxml-ng_1569616353378/work/libs/pll-modules/src/optimize/pll_optimize.c:1548: recomp_iterative_multi: Assertion
xguess[p] >= xmin && xguess[p] <= xmax' failed. bash-tree: line 1: 94101 Aborted (core dumped) raxml-ng --msa all-concatenated-only-natural.fa --model modeltest-output.part.aic --seed 2 --threads 2 `I don't know what might be causing this.
Any help is much appreciate it!