amkozlov / raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible
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Assertion `xguess[p] >= xmin && xguess[p] <= xmax' failed error message #115

Closed mjgomez12 closed 1 year ago

mjgomez12 commented 3 years ago

Hi,

I am trying to use raxml-ng for phylogenetic reconstruction of a set of chloroplasts. When I run it I get the following error:

`[00:00:00] NOTE: Resuming execution from checkpoint (logLH: -327888.58, ML trees: 16, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 3 / 761 / 12128

Starting ML tree search with 20 distinct starting trees

[00:00:00 -327888.581464] SPR radius for FAST iterations: 20 (autodetect) [00:00:00 -327888.581464] SLOW spr round 7 (radius: 15) raxml-ng: /opt/conda/conda-bld/raxml-ng_1569616353378/work/libs/pll-modules/src/optimize/pll_optimize.c:1548: recomp_iterative_multi: Assertion xguess[p] >= xmin && xguess[p] <= xmax' failed. raxml-ng: /opt/conda/conda-bld/raxml-ng_1569616353378/work/libs/pll-modules/src/optimize/pll_optimize.c:1548: recomp_iterative_multi: Assertionxguess[p] >= xmin && xguess[p] <= xmax' failed. bash-tree: line 1: 94101 Aborted (core dumped) raxml-ng --msa all-concatenated-only-natural.fa --model modeltest-output.part.aic --seed 2 --threads 2 `

I don't know what might be causing this.

Any help is much appreciate it!

amkozlov commented 3 years ago

@mjgomez12 thanks for reporting! could you please post full raxml-ng log file, and if possible, your input files (all-concatenated-only-natural.fa and modeltest-output.part.aic)?

amkozlov commented 1 year ago

If the issue still exists, please reopen.