Closed esteinig closed 7 years ago
Ascertainment bias correction is already available as of version 0.4.0.
You can use same models as in old good RAxML, namely:
Lewis: e.g.--model GTR+G+ASC_LEWIS
Felsenstein: e.g. --model GTR+G+ASC_FELS{1000}
// 1000 invariant sites
Stamatakis: e.g. --model GTR+G+ASC_STAM{1000/2000/3000/4000}
// 1000 invariant As, 2000 Cs, 3000 Gs, 4000 Ts
See also: https://github.com/amkozlov/raxml-ng/wiki/Input-data#evolutionary-model
Please let me know if there will be any problems/questions.
My apologies for overlooking the Wiki entry - this is exactly it. Many thanks!
Great, so I will close this issue now.
Thanks you so much for this amazing re-write, very much looking forward to using it. Is there any chance to implement the ascertainment bias correction options from RAxML?