I noticed that some sequences are deleted due to duplication or gap-only and I want to reserve them, but I don't find the threshold setting in the parameters.
`WARNING: Sequences GCF_902157185.1_18174_4_23_genomic and GCF_900512345.2_GCA_900512345_genomic are exactly identical!
WARNING: Duplicate sequences found: 1
NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed)`
Hi,
I noticed that some sequences are deleted due to duplication or gap-only and I want to reserve them, but I don't find the threshold setting in the parameters.
`WARNING: Sequences GCF_902157185.1_18174_4_23_genomic and GCF_900512345.2_GCA_900512345_genomic are exactly identical! WARNING: Duplicate sequences found: 1
NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed)`
How can I "force" reserve all sequences?