search

amkozlov / raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible
GNU Affero General Public License v3.0
374 stars 62 forks source link

can raxml-ng handle 6 million genomes of SARS-CoV-2? #172

Closed liamxg closed 5 months ago

liamxg commented 5 months ago

Dear @amkozlov,

I have a dataset of 6 million genomes of SARS-CoV-2, can raxml-ng handle of this size?

amkozlov commented 5 months ago

Dear @liamxg ,

the short answer is: no :)

For a detailed discussion, please read https://academic.oup.com/mbe/article/38/5/1777/6030946?login=false and https://academic.oup.com/mbe/article/39/12/msac254/6832260?login=false

liamxg commented 5 months ago

Dear @amkozlov, Thanks. What should I do, if I want to get a good tree or subtrees (millions of sequences each), thanks.

amkozlov commented 5 months ago

Please read the papers I linked above. If you do not find the answers there, please use our google group which is much better suited for such general questions: https://groups.google.com/g/raxml

liamxg commented 5 months ago

Dear @amkozlov,

Thanks for your help. I will.