amkozlov / raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible
GNU Affero General Public License v3.0
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Excluding sites #189

Open fluttercork opened 3 months ago

fluttercork commented 3 months ago

Would it be possible to have raxml-ng recognize site weights of 0 (or, alternatively, to implement the exclude file of RAxML?), which would be a quick and easy way for the user to exclude sites from the analysis?

When working with MSAs with multiple partitions, I often want to exclude one or more partitions, which could be more easily done using a weight / exclusion file than rebuilding the MSA each and every time.

Thanks,

Olaf

liamxg commented 3 months ago

Dear @fluttercork, Good idea!

amkozlov commented 3 months ago

Dear Olaf,

thanks for the suggestion, I will put in on my list