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amkozlov / raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible
GNU Affero General Public License v3.0
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Fast support measures #24

Open stamatak opened 7 years ago

stamatak commented 7 years ago

There now is an entire zoo with fast support measures, e.g., aLRT test and derivatives thereof, ultrafast bootstrap (probably not applicable due to the nature of the search algorithm), quartet-based measures: We need to decide at some point which ones we want to integrate.

amkozlov commented 6 years ago

Also look at the "transfer distance": https://www.biorxiv.org/content/early/2017/06/23/154542

Implementation: https://github.com/evolbioinfo/booster

RAxML rapid bootstrapping: https://academic.oup.com/sysbio/article/57/5/758/1618491