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amkozlov / raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible
GNU Affero General Public License v3.0
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Discuss discrete tree operations. #31

Open stamatak opened 7 years ago

stamatak commented 7 years ago

A lot of discrete tree operations (IC/TC scores, tree plausibility analysis) and some new stuff (quartets and this paper here http://www.biorxiv.org/content/biorxiv/early/2017/06/23/154542.full.pdf) should not go into raxml-ng but rather to the modules. We need to discuss this at some point, but I think all operations on a discrete set of trees that don't require likelihood calculations should not be part of RAxML-NG.

stamatak commented 6 years ago

We discussed that today and came to a good conclusion -> bootstopping gets directly integrated, the rest goes into a separate tool

stamatak commented 6 years ago

low priority as most of this functionality is also provided by old standard RAxML