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amkozlov / raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible
GNU Affero General Public License v3.0
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Compilation error due to a missing CMakeLists.txt #79

Closed moravveji closed 4 years ago

moravveji commented 4 years ago

Hi,

I am trying to compile raxml-ng v. 0.9.0 for one our cluster users on the Intel Haswell nodes, with CentOS 7.6 OS, using the GCC 6.4.0 and OpenMPI 2.1.2.

During the cmake step, I get the following error:

CMake Error at libs/CMakeLists.txt:7 (add_subdirectory): The source directory /data/leuven/sys/x0090231/easybuild/work/RAxML-NG/raxml-ng/libs/pll-modules does not contain a CMakeLists.txt file.

I have attached my build script, and also the build logs (after trimming paths heavily).

Would you let me know if I am doing something wrong? Otherwise, I will be grateful to have your feedback.

Regards, Ehsan

moravveji commented 4 years ago

Oops ... forgot to attach logs.tar.gz

amkozlov commented 4 years ago

Hi Ehsan,

you have probably downloaded the auto-generated source code archive which does not contain submodules (libpll etc.).

Please use one of the following options:

  1. Download package with pre-compiled dependencies: https://github.com/amkozlov/raxml-ng/releases/download/0.9.0/raxml-ng_v0.9.0_linux_x86_64_MPI.zip

  2. Clone raxml-ng repo recusively, as described here: https://github.com/amkozlov/raxml-ng/wiki/Installation#building-from-source

Best, Alexey

moravveji commented 4 years ago

@amkozlov : Thanks for the tip. I just tried it, and could easily fetch it all.