Open amkrajewski opened 9 months ago
Hello @amkrajewski! Please comment below on this issue while attaching a ZIP file with atomic structures (POSCAR
/CIF
s) to get started! You can put keywords describing it in the body of the comment.
As soon as you do it, your atomic structures will be processed through several tools, described below, and return a neat Markdown report.
pySIPFENN
framework, returning (1) array of descriptors (feature vectors) in Numpy .npy
and CSV
formats you can use for your ML modelling, alongside formation energy predictions.ALIGNN
framework, returning (1) results from 7 ALIGNN
models specified here and (2) compressed graph representation files.CHGNet
model, returning (1) energy prediction for your input, (2) CHGNet
-relaxed structures in the same format (POSCAR
/CIF
) as your input, and (3) energy prediction for the relaxed structures.👍 [1/3] I found the ZIP file linked in your comment. I will now attempt to download it and validate contents!
👍 [2/3] I received your files and extracted them! Now, I will set up the calculation environment and run: pySIPFENN
, CHGNet
, and ALIGNN
.
You can now have A coffee and wait for results. Obtaining results should take at least a couple of minutes.
🚀 [3/3] All Done! Your submission and all results been persisted under contrib.mpdd.org/6d844c20. For results, please see the table below:
pySIPFENN: | name | SIPFENN_NN30-OQMD [eV/atom] |
---|---|---|
POS1.POSCAR | -2.1795 | |
POS2.POSCAR | -2.1757 | |
POS3.POSCAR | -2.1721 | |
POS4.POSCAR | -2.1617 | |
POS5.POSCAR | -2.1617 | |
POS6.POSCAR | -2.1971 | |
POS7.POSCAR | -2.1565 | |
POS8.POSCAR | -2.162 | |
POS9.POSCAR | -2.1971 | |
POS10.POSCAR | -2.1795 | |
POS11.POSCAR | -2.1617 | |
POS12.POSCAR | -2.1971 | |
POS13.POSCAR | -2.1947 | |
POS14.POSCAR | -2.1971 | |
POS15.POSCAR | -2.2337 | |
POS16.POSCAR | -2.1923 |
ALIGNN: | name | ALIGNN-JARVIS Formation Energy [eV/atom] | ALIGNN-JARVIS MBJ Bandgap [eV] | ALIGNN-JARVIS Shear Modulus [GPa] | ALIGNN-JARVIS Bulk Modulus [GPa] | ALIGNN-JARVIS Exfoliation Energy [meV/atom] | ALIGNN-MP Formation Energy [eV/atom] | ALIGNN-MP PBE Bandgap [eV] |
---|---|---|---|---|---|---|---|---|
POS1.POSCAR | -1.6943 | 5.7403 | 105.4842 | 190.9032 | 75.7562 | -1.3171 | 2.5678 | |
POS2.POSCAR | -1.7022 | 5.7204 | 105.1507 | 190.241 | 67.2143 | -1.3326 | 2.5193 | |
POS3.POSCAR | -1.6948 | 5.7173 | 104.9161 | 190.2089 | 68.8701 | -1.3202 | 2.4758 | |
POS4.POSCAR | -1.7103 | 5.7212 | 107.0084 | 192.76 | 69.53 | -1.3459 | 2.5426 | |
POS5.POSCAR | -1.7082 | 5.7756 | 104.9222 | 190.1892 | 72.7455 | -1.3681 | 2.6568 | |
POS6.POSCAR | -1.7267 | 5.7661 | 104.7497 | 190.6456 | 74.6281 | -1.3558 | 2.6357 | |
POS7.POSCAR | -1.7023 | 5.8206 | 104.9592 | 189.77 | 74.6987 | -1.3364 | 2.5778 | |
POS8.POSCAR | -1.7024 | 5.785 | 104.595 | 189.9404 | 75.0354 | -1.3142 | 2.5446 | |
POS9.POSCAR | -1.7229 | 5.8222 | 106.8579 | 191.6246 | 72.7231 | -1.3527 | 2.631 | |
POS10.POSCAR | -1.6899 | 5.7499 | 105.8795 | 191.4178 | 75.3754 | -1.3092 | 2.5622 | |
POS11.POSCAR | -1.7156 | 5.9501 | 107.5848 | 192.3704 | 77.9746 | -1.3595 | 2.6407 | |
POS12.POSCAR | -1.7315 | 5.7704 | 106.1748 | 191.5511 | 75.0115 | -1.3392 | 2.6168 | |
POS13.POSCAR | -1.7246 | 5.7627 | 105.8529 | 189.8681 | 69.2647 | -1.3406 | 2.6045 | |
POS14.POSCAR | -1.7298 | 5.7718 | 105.4134 | 190.3587 | 72.2469 | -1.3643 | 2.6818 | |
POS15.POSCAR | -1.7493 | 5.758 | 104.9614 | 190.8326 | 74.3743 | -1.351 | 2.6596 | |
POS16.POSCAR | -1.7335 | 5.8112 | 105.5416 | 190.675 | 70.1058 | -1.3653 | 2.6319 |
CHGNet:
Please note that these are energies, not formation energies. | Name | CHGNet_0.3.0-MP Energy [eV/atom] | CHGNet_0.3.0-MP Relaxed Energy [eV/atom] |
---|---|---|---|
POS1.POSCAR | -4.8025 | -6.4985 | |
POS2.POSCAR | -4.7989 | -6.4752 | |
POS3.POSCAR | -4.7968 | -6.4717 | |
POS4.POSCAR | -4.8027 | -6.5373 | |
POS5.POSCAR | -4.8017 | -6.4655 | |
POS6.POSCAR | -4.8398 | -6.4744 | |
POS7.POSCAR | -4.8039 | -6.487 | |
POS8.POSCAR | -4.8002 | -6.4897 | |
POS9.POSCAR | -4.8406 | -6.5061 | |
POS10.POSCAR | -4.8026 | -6.4983 | |
POS11.POSCAR | -4.803 | -6.5373 | |
POS12.POSCAR | -4.8405 | -6.5062 | |
POS13.POSCAR | -4.8366 | -6.4595 | |
POS14.POSCAR | -4.8398 | -6.4743 | |
POS15.POSCAR | -4.879 | -6.5094 | |
POS16.POSCAR | -4.8393 | -6.4742 |
For the next 30 days, you can also download other results like pySIPFENN's raw descriptor data Numpy array and CHGNet-relaxed structure files under Artifact tab here Enjoy!
You do not need to put in anything here :)
Just open the issue by clicing the green "Submit new issue" and within 10-15s a message instructing you do upload your files should appear!