add dnaapler to reorientate contigs

ammaraziz / ctgap

Chlamydia trachomatis Genome Assembly Pipeline

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Closed ammaraziz closed 6 months ago

ammaraziz commented 6 months ago

shovill -> scaffold -> gapfiller -> dnaapler

dnaapler all \
-i input.fasta \
-o output_directory_path \
-p my_genome_name

ammaraziz commented 6 months ago

not relevant