automate ref-denovo assembly arm of CtGAP
Users to supply a file containing sample names and choice reference strain for each sample for the ref-denovo step.
The choice ref strain may be from CtGAP coverage output (or just from knowledge).
See examples below:
automate ref-denovo assembly arm of CtGAP Users to supply a file containing sample names and choice reference strain for each sample for the ref-denovo step. The choice ref strain may be from CtGAP coverage output (or just from knowledge). See examples below:
sample_ID ref_strain ERR12345678 A_Sa1 ERR87654321 Ba_Apache2