Closed ammaraziz closed 2 years ago
wfi automatically detects fastq.gz files. The issue with this setup is that while it's easy for the user to run, the pattern needs to match the file name structure:
wfi
# required patterns = {sample_name} and {sample_number} pattern_illumina : /{sample_name}_{sample_number}_L{lane_number}_{pair}_001.fastq.gz pattern_ont : /{sample_name}_{sample_number}.fastq.gz pattern_pgm : /{sample_name}.fastq.gz
Add instructions for users on recommended file names and how to modify the config file.
wfiautomatically detects fastq.gz files. The issue with this setup is that while it's easy for the user to run, the pattern needs to match the file name structure:Add instructions for users on recommended file names and how to modify the config file.