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ammaraziz / wfi

whofluIRMA - influenza assembly pipeline
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rewrite snakefile #20

Closed ammaraziz closed 10 months ago

ammaraziz commented 10 months ago

Rewrite and separate the snakefile to use separate smk files:

  1. common.smk
  2. filter.smk
  3. paired.smk
  4. single.smk
  5. long.smk
  6. report.smk

Use this as an example:

https://github.com/snakemake-workflows/dna-seq-gatk-variant-calling