search

amnh / PCG

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
28 stars 1 forks source link

Have FASTA parser rely on Alphabet.IUPAC module #121

Closed recursion-ninja closed 5 years ago

recursion-ninja commented 5 years ago

The FASTA parser reimplements the IUPAC code conversions that are implemented more generally in the Data.Alphabet.IUPAC module. We should remove the duplicate code and have the FASTA parser rely on this module.

recursion-ninja commented 5 years ago

This is partially implemented, but is currently throwing exceptions on Bimap lookups.

recursion-ninja commented 5 years ago

The implementation has been corrected and completed here 8c15f99.