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𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
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TNT xread correct the handling of "- interpretation flag" #136

Open recursion-ninja opened 5 years ago

recursion-ninja commented 5 years ago

There is a flag in TNT XREAD commands to determine how to interpret the - char when encountered in a character.

The - char can be interpreted in one of two ways:

  1. All non-gap states observed
  2. Only the gap state observed

We must look for the flag in the TNT file and correctly interpret the - symbol in the TNT parser's post-processing pass.