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amnh / PCG

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
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TNT parser should use the cannonical IUPAC codes #137

Closed recursion-ninja closed 3 years ago

recursion-ninja commented 5 years ago

The Data.Alphabet.IUPAC module exports Bimaps for converting between IUPAC codes and thier ambiguity groups for DNA, RNA, and amino acids. The TNT parser should use this instead of the internal conversion so that the functionality is consistent with the FASTA parser and PCG's IUPAC code rendering.

recursion-ninja commented 3 years ago

This has been updated by d2be38386cfb90f43527988a419290b00c50062e.

ima-hima commented 3 years ago

You guys are still working on this? Bravo!

On Mar 11, 2021, at 14:46, recursion-ninja @.***> wrote:

This has been updated by d2be383 https://github.com/amnh/PCG/commit/d2be38386cfb90f43527988a419290b00c50062e.

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