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ampinzonv / BB2

BioBash UN official repository
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PROCESS_OPTARGS fails on some Linux Kernels? #14

Open ampinzonv opened 7 months ago

ampinzonv commented 7 months ago

CONTEXT BioBASH uses the library process_optargs for handling all CLI.

ISSUE On some systems (i.e. Ubuntu 18 kernel 4) it seems that the library is not working. Constantly it complains about missing arguments. So far I am not sure if it is something related to any pre-requisite or is something related to the Kernel itself. This issue makes useless any BioBASH executable.

SOLUTION A in depth analysis of the issue has to be addressed, because some scripts appear to work when running all unit tests. Not really sure what is the solution by now.

koriege commented 1 month ago

this might be related to bash v4 vs bash v5