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amplab / snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
https://www.microsoft.com/en-us/research/project/snap/
Apache License 2.0
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allow soft-masked ambiguous characters (fixes #46) #47

Closed blahah closed 9 years ago

blahah commented 9 years ago

Fixes a bug where sequences containing lowercase 'n' (perfectly valid and not uncommon) were skipped, leading to an unpaired read error.

AmplabJenkins commented 9 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/7/ Test FAILed.

blahah commented 9 years ago

Note that the failed test is unrelated to this PR: https://github.com/amplab/snap/issues/45

AmplabJenkins commented 9 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/8/ Test FAILed.