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amplab / snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
https://www.microsoft.com/en-us/research/project/snap/
Apache License 2.0
287 stars 66 forks source link

Initial code review of changes for hg38 alt contigs #63

Open rnpandya opened 8 years ago

rnpandya commented 8 years ago

You can generate test files with tests/alttestgen.py (test.fa, test_alts.txt, test.sam).

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/9/ Test FAILed.

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/10/ Test FAILed.

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/11/ Test FAILed.

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/12/ Test FAILed.

AmplabJenkins commented 8 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/13/ Test PASSed.

AmplabJenkins commented 8 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/14/ Test PASSed.

AmplabJenkins commented 8 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/15/ Test PASSed.

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/16/ Test FAILed.

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/17/ Test FAILed.

AmplabJenkins commented 8 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/18/ Test PASSed.

AmplabJenkins commented 8 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/19/ Test PASSed.

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/20/ Test FAILed.

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/21/ Test FAILed.

AmplabJenkins commented 8 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/22/ Test FAILed.