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amplab / snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
https://www.microsoft.com/en-us/research/project/snap/
Apache License 2.0
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Further development? #77

Closed sklages closed 7 years ago

sklages commented 8 years ago

I am looking for a bwa-mem alternative for aligning human/mouse WGS/WES data. Is there any active development of snap going on? Master branch seems quite outdated. Are there publications available using snap as "main read mapper" in their projects?

best, Sven

bolosky commented 7 years ago

Yes, we’re still working on SNAP some. I had an intern working on extending it to map 10x reads, for instance (though that isn’t done yet).

I’ve got plans to do more work on it to add things like split read mapping and to do things like auto-calibrating the distance between paired-end reads, though I’m not sure when that will be finished.

And yes, it’s probably time to update master to what’s in dev before we go adding more features.

From: sklages [mailto:notifications@github.com] Sent: Friday, September 16, 2016 4:47 AM To: amplab/snap snap@noreply.github.com Subject: [amplab/snap] Further development? (#77)

I am looking for a bwa-mem alternative for aligning human/mouse WGS/WES data. Is there any active development of snap going on? Master branch seems quite outdated. Are there publications available using snap as "main read mapper" in their projects?

best, Sven

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sklages commented 7 years ago

OK, thanks for the info.