Users may need to add HADOOP_HOME components to their classpath to leverage parquet. The compute-adam-classpath.sh script does not add any hadoop-common/hadoop-core/hadoop-client/etc jars to the classpath.
The java parquet.hadoop.PrintFooter adam/NA12878.adam command fails to execute for this reason.
Users may need to add HADOOP_HOME components to their classpath to leverage parquet. The compute-adam-classpath.sh script does not add any hadoop-common/hadoop-core/hadoop-client/etc jars to the classpath.
The
java parquet.hadoop.PrintFooter adam/NA12878.adam
command fails to execute for this reason.