LourensVeen
commented
2 months ago Hi, apologies for the late response, the AMUSE team has been travelling recently and I'm only now back in the right timezone and at a reasonable level of brain functionality.
Regarding your mystery $PATH components, maybe this blog post explains what's happening?
We're aware that there are issues with getting AMUSE installed, and I'm working on a whole new build system and Conda packages that will make everything substantially better, but it's not quite there yet.
The development install is more reliable than the pip-based one, so please use that for the time being. On a Mac with Apple Silicon, I would expect one of the libraries (Sapporo light) and some of the community codes to not build, because they require CUDA and that is not available on modern Macs. Then there are one or two community codes with known issues that we need to fix. Galaxia and PeTaR should work though, and 21 is a rather low number, so there's still something wrong.
Your config.mk looks pretty okay, but I'm wondering where your gcc and g++ are coming from. Did you install GCC using Homebrew, or are they the aliases for clang that come with XCode?
It looks like Homebrew's MPI adds that -Wl,-ld_classic line to the compiler flags, probably as a work-around for Apple releasing a new linker in a broken state a few XCode versions ago. Which version of XCode are you using?
Regardless of the current setup, it will probably help to install GCC using Homebrew and then to point the build system to it by setting alias gcc=gcc-12 g++=g++-12 (or whichever version you have). Then try a make clean (to avoid mixing output of different compilers) and pip install . to do a development build.
marlito-gonaldo-byte
I am trying to install amuse for creating cluster to be used as input data for PeTar N-body simulation on a MacBook Pro M2 2022. So I believe I only need amuse-galaxia ? The code is downloaded using : git clone https://github.com/amusecode/amuse.git I followed documentation steps, using python virtual environment : https://amuse.readthedocs.io/en/latest/install/howto-install-AMUSE.html , note that I am using homebrew instead of MacPort, so I configured manually the environment, here is my .zprofile file :
and my .zshrc :
giving this virtual environment $PATH :
/Users/maelgonin/Desktop/PBH/code/Amuse-env/bin:/Users/maelgonin/.pyenv/shims:/opt/homebrew/bin/mpiexec:/opt/homebrew/bin/python3.9/Applications/Sublime Text.app/Contents/SharedSupport/bin:/opt/homebrew/bin:/opt/homebrew/bin/mpiexec:/opt/homebrew/bin/python3.9/Applications/Sublime Text.app/Contents/SharedSupport/bin:/opt/homebrew/bin:/usr/local/opt/python@3.9/bin:/Users/maelgonin/anaconda3/bin:/Users/maelgonin/anaconda3/condabin:/usr/local/opt/python@3.9/bin:/usr/local/opt/openmpi/bin:/Applications/Sublime Text.app/Contents/SharedSupport/bin:/opt/homebrew/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/Apple/usr/binI don't know why
/usr/local/opt/openmpi/binand/usr/local/opt/python@3.9/binkeep appearing in my PATH since it is not mentioned neither in my .zprofile nor .zshrc and this directory does not exist.When I try
pip install --no-cache-dir --force-reinstall amuse-galaxia:the config.mk file : config.txt
I should mentioned that I went through every solved issue mentioning "wheel" and couldn't find anything helping, I also tried the development build and I am only able to build 21 out 56 code and 5 out 6 libraries.
I believe it is a library issue because of this line
ld: library not found for -ld_classicon the output ofpip install --no-cache-dir --force-reinstall amuse-galaxiabut I can't figure out where is my mistake...