AMUSE installation problem on Mac

[astro-alice]

Hello! I am having difficulty figuring out why amuse won't install via pip install amuse. I am an undergrad working with @JPGlaser this summer in a REU!

(base) MacBook-Pro-3:~ palmerinfamily$ pip install amuse Collecting amuse Using cached amuse-2021.6.0.tar.gz (297 kB) Installing build dependencies ... error ERROR: Command errored out with exit status 1: command: /Users/palmerinfamily/opt/miniconda3/bin/python /Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip install --ignore-installed --no-user --prefix /private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-6hw9vwdm/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'amuse-framework>=13.0.0[MPI]' 'amuse-athena>=13.0.0' 'amuse-bhtree>=13.0.0' 'amuse-brutus>=13.0.0' 'amuse-bse>=13.0.0' 'amuse-capreole>=13.0.0' 'amuse-evtwin>=13.0.0' 'amuse-fastkick>=13.0.0' 'amuse-fi>=13.0.0' 'amuse-fractalcluster>=13.0.0' 'amuse-gadget2>=13.0.0' 'amuse-galactics>=13.0.0' 'amuse-galaxia>=13.0.0' 'amuse-halogen>=13.0.0' 'amuse-hermite>=13.0.0' 'amuse-hop>=13.0.0' 'amuse-huayno>=13.0.0' 'amuse-kepler>=13.0.0' 'amuse-kepler-orbiters>=13.0.0' 'amuse-mameclot>=13.0.0' 'amuse-mercury>=13.0.0' 'amuse-mmams>=13.0.0' 'amuse-ph4>=13.0.0' 'amuse-seba>=13.0.0' 'amuse-secularmultiple>=13.0.0' 'amuse-smalln>=13.0.0' 'amuse-sphray>=13.0.0' 'amuse-sse>=13.0.0' 'amuse-twobody>=13.0.0' cwd: None Complete output (155 lines): DEPRECATION: Extras after version '>=13.0.0[MPI]'. pip 21.0 will remove support for this functionality. A possible replacement is moving the extras before version specifiers. Collecting amuse-athena>=13.0.0 Using cached amuse-athena-2021.6.0.tar.gz (1.0 MB) Installing build dependencies: started Installing build dependencies: finished with status 'error' ERROR: Command errored out with exit status 1: command: /Users/palmerinfamily/opt/miniconda3/bin/python /Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip install --ignore-installed --no-user --prefix /private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-szj5ihxh/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- setuptools wheel amuse-framework cwd: None Complete output (144 lines): Collecting amuse-framework Using cached amuse-framework-2021.6.0.tar.gz (901 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing wheel metadata: started Preparing wheel metadata: finished with status 'done' Collecting setuptools Using cached setuptools-57.0.0-py3-none-any.whl (821 kB) Collecting wheel Using cached wheel-0.36.2-py2.py3-none-any.whl (35 kB) Collecting docutils>=0.6 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting h5py>=1.1.0 Using cached h5py-3.3.0-cp39-cp39-macosx_10_9_x86_64.whl (3.0 MB) Collecting numpy>=1.2.2 Using cached numpy-1.21.0-cp39-cp39-macosx_10_9_x86_64.whl (16.9 MB) Collecting pip>=19.0.0 Using cached pip-21.1.2-py3-none-any.whl (1.5 MB) Collecting pytest>=4.0 Using cached pytest-6.2.4-py3-none-any.whl (280 kB) Collecting attrs>=19.2.0 Using cached attrs-21.2.0-py2.py3-none-any.whl (53 kB) Collecting iniconfig Using cached iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB) Collecting packaging Using cached packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting pluggy<1.0.0a1,>=0.12 Using cached pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting py>=1.8.2 Using cached py-1.10.0-py2.py3-none-any.whl (97 kB) Collecting pyparsing>=2.0.2 Using cached pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting toml Using cached toml-0.10.2-py2.py3-none-any.whl (16 kB) Building wheels for collected packages: amuse-framework Building wheel for amuse-framework (PEP 517): started Building wheel for amuse-framework (PEP 517): finished with status 'error' ERROR: Command errored out with exit status 1: command: /Users/palmerinfamily/opt/miniconda3/bin/python /Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/tmpilkrgt7i cwd: /private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-install-4u_vb9yq/amuse-framework_c2a845d18fb0485d84312f393db3b483 Complete output (97 lines): running bdist_wheel running build running configure_codes get_default_fcompiler: matching types: '['gnu95', 'nag', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']' Warning: Can't read registry to find the necessary compiler setting Make sure that Python modules winreg, win32api or win32con are installed. customize Gnu95FCompiler Could not locate executable gfortran Could not locate executable f95 customize NAGFCompiler customize AbsoftFCompiler Could not locate executable f90 Could not locate executable f77 customize IBMFCompiler Could not locate executable xlf90 Could not locate executable xlf customize IntelFCompiler Could not locate executable ifort Could not locate executable ifc customize GnuFCompiler Could not locate executable g77 customize G95FCompiler Could not locate executable g95 customize PGroupFCompiler Could not locate executable pgfortran don't know how to compile Fortran code on platform 'posix' Running configure for AMUSE config.mk not generated; output of configure: checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgfortran... no checking for pgf95... no checking for lf95... no checking for ftn... no checking for nagfor... no checking whether we are using the GNU Fortran compiler... no checking whether accepts -g... no configure: error: No fortran compiler found, please set the FC flag

  Traceback (most recent call last):
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 280, in <module>
      main()
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 263, in main
      json_out['return_val'] = hook(**hook_input['kwargs'])
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 204, in build_wheel
      return _build_backend().build_wheel(wheel_directory, config_settings,
    File "/private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-b05me6pr/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 221, in build_wheel
      return self._build_with_temp_dir(['bdist_wheel'], '.whl',
    File "/private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-b05me6pr/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 207, in _build_with_temp_dir
      self.run_setup()
    File "/private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-b05me6pr/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 258, in run_setup
      super(_BuildMetaLegacyBackend,
    File "/private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-b05me6pr/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 150, in run_setup
      exec(compile(code, __file__, 'exec'), locals())
    File "setup.py", line 54, in <module>
      setup(
    File "/private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-b05me6pr/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 153, in setup
      return distutils.core.setup(**attrs)
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/distutils/core.py", line 148, in setup
      dist.run_commands()
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/distutils/dist.py", line 966, in run_commands
      self.run_command(cmd)
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/distutils/dist.py", line 985, in run_command
      cmd_obj.run()
    File "/private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-b05me6pr/overlay/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 299, in run
      self.run_command('build')
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/distutils/cmd.py", line 313, in run_command
      self.distribution.run_command(command)
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/distutils/dist.py", line 985, in run_command
      cmd_obj.run()
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/distutils/command/build.py", line 135, in run
      self.run_command(cmd_name)
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/distutils/cmd.py", line 313, in run_command
      self.distribution.run_command(command)
    File "/Users/palmerinfamily/opt/miniconda3/lib/python3.9/distutils/dist.py", line 985, in run_command
      cmd_obj.run()
    File "/private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-install-4u_vb9yq/amuse-framework_c2a845d18fb0485d84312f393db3b483/support/setup_codes.py", line 1149, in run
      raise Exception("configure failed")
  Exception: configure failed
  ----------------------------------------
  ERROR: Failed building wheel for amuse-framework
Failed to build amuse-framework
ERROR: Could not build wheels for amuse-framework which use PEP 517 and cannot be installed directly
----------------------------------------

ERROR: Command errored out with exit status 1: /Users/palmerinfamily/opt/miniconda3/bin/python /Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip install --ignore-installed --no-user --prefix /private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-szj5ihxh/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- setuptools wheel amuse-framework Check the logs for full command output.

---

ERROR: Command errored out with exit status 1: /Users/palmerinfamily/opt/miniconda3/bin/python /Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip install --ignore-installed --no-user --prefix /private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-6hw9vwdm/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'amuse-framework>=13.0.0[MPI]' 'amuse-athena>=13.0.0' 'amuse-bhtree>=13.0.0' 'amuse-brutus>=13.0.0' 'amuse-bse>=13.0.0' 'amuse-capreole>=13.0.0' 'amuse-evtwin>=13.0.0' 'amuse-fastkick>=13.0.0' 'amuse-fi>=13.0.0' 'amuse-fractalcluster>=13.0.0' 'amuse-gadget2>=13.0.0' 'amuse-galactics>=13.0.0' 'amuse-galaxia>=13.0.0' 'amuse-halogen>=13.0.0' 'amuse-hermite>=13.0.0' 'amuse-hop>=13.0.0' 'amuse-huayno>=13.0.0' 'amuse-kepler>=13.0.0' 'amuse-kepler-orbiters>=13.0.0' 'amuse-mameclot>=13.0.0' 'amuse-mercury>=13.0.0' 'amuse-mmams>=13.0.0' 'amuse-ph4>=13.0.0' 'amuse-seba>=13.0.0' 'amuse-secularmultiple>=13.0.0' 'amuse-smalln>=13.0.0' 'amuse-sphray>=13.0.0' 'amuse-sse>=13.0.0' 'amuse-twobody>=13.0.0' Check the logs for full command output.

[JPGlaser]

@stevemcmillan and @rieder , you might have some insight regarding this! I don't have a Mac device running around and nabbing the ISO from the Mac for a virtual box is seeming a tad tricky these days.

~ Joe G.

[rieder]

Hi - sorry for the delay! It looks like no fortran compiler is available (configure: error: No fortran compiler found, please set the FC flag), this is a requirement for installing AMUSE.

[astro-alice]

Hello! - its no worries! I think I was able to correct everything, and I installed fortran and openmpi, but now I get this error: ERROR: Failed building wheel for amuse-simplex Failed to build amuse-athena amuse-bhtree amuse-evtwin amuse-galactics amuse-hop amuse-mmams amuse-simplex ERROR: Could not build wheels for amuse-athena, amuse-bhtree, amuse-evtwin, amuse-galactics, amuse-hop, amuse-mmams, amuse-simplex which use PEP 517 and cannot be installed directly ERROR: Command errored out with exit status 1: /Users/palmerinfamily/opt/miniconda3/bin/python /Users/palmerinfamily/opt/miniconda3/lib/python3.9/site-packages/pip install --ignore-installed --no-user --prefix /private/var/folders/w1/4hxn82w15hs95vxmkt8jrn800000gn/T/pip-build-env-526p6emm/overlay --no-warn-script-location --no-binary :none: --only-binary :none:

[rieder]

Could you try installing one of these manually, e.g. pip install -v amuse-bhtree? This may give a bit more info on what is going wrong.

[astro-alice]

I receive this, ERROR: Failed building wheel for amuse-bhtree Failed to build amuse-bhtree ERROR: Could not build wheels for amuse-bhtree which use PEP 517 and cannot be installed directly

[rieder]

Hmm, I thought with -v you would get a little more output.

[stale[bot]]

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