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anant-dadu / PDProgressionSubtypes

Identification and prediction of Parkinson disease subtypes and progression using machine learning in two cohorts
GNU General Public License v3.0
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Missing. PKL file #1

Open xu15825503775 opened 1 year ago

xu15825503775 commented 1 year ago

Hello, author. When I want to reproduce ppmi Subtype Progress_ At this point in analysis, I would like to know how these three pkl files were generated. Can you provide relevant PKL files here

PPMI_CLINICAL_GEN_DATA_DIR_INSIDE = PPMI_CLINICAL_GEN_DATA_DIR_INSIDE / 'generated_data/clinical/ppmi'

with open(PPMI_CLINICAL_GEN_DATA_DIR_INSIDE / 'preprocessed/{}.pkl'.format(dataset_name), 'rb') as f: preprocessed_data = pickle.load(f)

with open(PPMI_CLINICAL_GEN_DATA_DIR_INSIDE / 'representation_learning/{}.pkl'.format(dataset_name), 'rb') as f: representation_learning_data = pickle.load(f)

with open(PPMI_CLINICAL_GEN_DATA_DIR_INSIDE / 'clustering/{}.pkl'.format(dataset_name), 'rb') as f: clustering_data = pickle.load(f)

lucaskup commented 1 year ago

I'm encountering the same issue with reproducing ppmi Subtype Progress_ I'm also interested to know how these three pkl files (preprocessed, representation_learning, and clustering) were generated. Could you please provide the relevant PKL files here or share the steps to generate them? Your assistance would be greatly appreciated.