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anastasia-lucas / hudson

An R package for creating mirrored Manhattan plots
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set different p-value cut-off for upper and bottom #9

Closed Shicheng-Guo closed 4 years ago

Shicheng-Guo commented 4 years ago

Hi Anastasia,

How to set different p-value cut-off for upper and bottom panel to show significant SNPs.

Thanks.

Shicheng

anastasia-lucas commented 4 years ago

Hi. If you are referring to the annotation and highlight thresholds, you can supply the function with a list of p-values in the order of upper panel p-value and bottom panel p-value ex. highlight_p=c(p_top, p_bottom) This should work for highlight_p and annotate_p. Please let me know if your question was referring to something else.