Closed IoannaSkampardoni closed 3 years ago
Hi, n_threads is an optional argument (so does covariate_tsv). You gave it as mandatory. That's why pyHYDRA take n_threads as covariate_tsv, leading to your ValueError.
Please run this: clustering(feature_tsv, output_dir, k_min, k_max, cv_repetition, n_threads=n_threads)
Thanks
Great, thank you!
Hi. While running pyHYDRA without covariate_tsv, an error appears at the base.py line which normally reads the covariates file. From the error message 'ValueError: Invalid file path or buffer object type: <class 'int'>', I think it tries to read the covariates file but there is no such file. I attach a screenshot. Thank you.